Data Processing Tools - EEG/ECG

  • https://physionet.org/content/apdet/1.0.0/

    The apdet software package uses a new automated method to diagnose and quantify obstructive sleep apnea from single-lead electrocardiograms based on detection of the periodic oscillations in cardiac interbeat intervals that are often associated with prolonged cycles of sleep apnea.

    Before building or using the apdet software, you must install the free WFDB software package. Under MS-Windows, you will also need to install the free Cygwin environment before building or using the apdet software.

  • https://pypi.org/project/yasa/

    A Python package to analyze polysomnographic sleep recordings

    Automatic sleep staging of polysomnography data (see preprint article).

  • https://orbi.uliege.be/handle/2268/188955

    To detect artifacts and arousals in a reliable, systematic and reproducible automatic way, we developed an automatic detection based on time and frequency analysis with adapted thresholds derived from data themselves. The automatic detection performance is assessed using 5 statistic parameters, on 60 whole night sleep recordings coming from 35 healthy volunteers (male and female) aged between 19 and 26.

  • Click: Resources

  • https://github.com/anasimtiaz/sleep-edfx-toolbox

    Free and open-source software package designed specifically for the analysis of sleep-related signals stored in the European Data Format (EDF).

    It provides functionality for reading, processing, and visualizing PSG data.

    Also includes modules for sleep stage scoring and sleep fragmentation analysis

  • https://github.com/Mensen/swa-matlab

    Sleep Wave Analysis - an open source toolbox for matlab to score and analyse various waveforms in sleep EEG data

  • https://wonambi-python.github.io/

    A Python package for the analysis of EEG, ECoG and other electrophysiology modalities. It allows for visualization of the data and sleep stage scoring in a GUI. This package provides automatic detectors for spindles and slow waves.

Data Processing Tools - Actigraphy

Research/clinical and consumer-grade motion-based and multi-sensor wearables devices